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UniProtKB/Swiss-Prot entry Q9FCA2


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name DEF2_STRCO
Primary accession number Q9FCA2
Secondary accession numbers None
Integrated into Swiss-Prot on September 19, 2002
Sequence was last modified on September 19, 2002 (Sequence version 2)
Annotations were last modified on    November 25, 2008 (Entry version 43)
Name and origin of the protein
Protein name Peptide deformylase 2
Synonyms PDF 2
EC 3.5.1.88
Polypeptide deformylase 2
Gene name
Name: def2
OrderedLocusNames: SCO1211
ORFNames: 2SCG58.11c
From
Streptomyces coelicolor [TaxID: 1902] [HAMAP proteome]
Taxonomy Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Streptomycineae; Streptomycetaceae; Streptomyces.
Protein existence 3: Inferred from homology;
References
[1]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=ATCC BAA-471 / A3(2) / M145;
DOI=10.1038/417141a; PubMed=12000953 [NCBI, ExPASy, EBI, Israel, Japan]
Bentley S.D., Chater K.F., Cerdeno-Tarraga A.-M., Challis G.L., Thomson N.R., James K.D., Harris D.E., Quail M.A., Kieser H., Harper D., Bateman A., Brown S., Chandra G., Chen C.W., Collins M., Cronin A., Fraser A., Goble A., Hidalgo J., Hornsby T., Howarth S., Huang C.-H., Kieser T., Larke L., Murphy L.D., Oliver K., O'Neil S., Rabbinowitsch E., Rajandream M.A., Rutherford K.M., Rutter S., Seeger K., Saunders D., Sharp S., Squares R., Squares S., Taylor K., Warren T., Wietzorrek A., Woodward J.R., Barrell B.G., Parkhill J., Hopwood D.A.;
"Complete genome sequence of the model actinomycete Streptomyces coelicolor A3(2).";
Nature 417:141-147(2002).
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
AL939108; CAC01493.1; ALT_INIT; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
RefSeq NP_625500.1; -.
3D structure databases
HSSP P96113; 1LME. [HSSP ENTRY / PDB]
ModBase Q9FCA2.
Enzyme and pathway databases
BioCyc SCOE100226:SCO1211-MON; -.
Ontologies
GO
GO:0005506; Molecular function: iron ion binding (inferred from electronic annotation from InterPro).
GO:0042586; Molecular function: peptide deformylase activity (inferred from electronic annotation from HAMAP).
GO:0006412; Biological process: translation (inferred from electronic annotation from HAMAP).
QuickGo view.
Family and domain databases
HAMAP MF_00163; -; 1.
PBIL [Tree]
InterPro IPR000181; Fmet_deformylase.
Graphical view of domain structure.
Gene3D G3DSA:3.90.45.10; Fmet_deformylase; 1.
PANTHER PTHR10458; Fmet_deformylase; 1.
Pfam PF01327; Pep_deformylase; 1.
Pfam graphical view of domain structure.
PIRSF PIRSF004749; Pep_def; 1.
PRINTS PR01576; PDEFORMYLASE.
ProDom PD003844; Fmet_deformylase; 1.
[Domain structure / List of seq. sharing at least 1 domain]
TIGRFAMs TIGR00079; pept_deformyl; 1.
ProtoNet Q9FCA2.
Genome annotation databases
GeneID 1096634; -.
GenomeReviews AL645882_GR; SCO1211.
KEGG sco:SCO1211; -.
NMPDR fig|100226.1.peg.1178; -.
Phylogenomic databases
HOGENOM Q9FCA2; -.
Genome annotation databases
CMR Q9FCA2; SCO1211.
Other
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
Complete proteome; Hydrolase; Iron; Metal-binding; Protein biosynthesis.
Features
SEVIEWER logo Feature table viewer
KeyFrom   To Length Description FTId
CHAIN   1   179  179     Peptide deformylase 2. PRO_0000082853
ACT_SITE   147   147        By similarity. 
METAL   104   104        Iron (By similarity). 
METAL   146   146        Iron (By similarity). 
METAL   150   150        Iron (By similarity). 
Sequence information
Length: 179 AA [This is the length of the unprocessed precursor] Molecular weight: 19476 Da [This is the MW of the unprocessed precursor] CRC64: 8ABB3827812788F2 [This is a checksum on the sequence]
        10         20         30         40         50         60 
MRQGSIPGAH GRVRPLGLLG DPVLHARCAE VTDFGPELAA LVEDLFATMY AAHGVGLAAN 

        70         80         90        100        110        120 
QVGEAVRVFV YDCPDDEDER HLGHVVNPRL VETGGVVVRG PEGCLSLPGL EAGTERYDEA 

       130        140        150        160        170 
VVTGFTVAGE PVTVRGTGFF ARCLQHECDH LEGRVYADRL TGRRHRKLMR QVARASWHR 

Q9FCA2 in FASTA format

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BLAST logo BLAST submission on ExPASy/SIB
or at NCBI (USA)
Tools Sequence analysis tools: ProtParam, ProtScale, Compute pI/Mw, PeptideMass, PeptideCutter, Dotlet (Java)
PROSITE logo ScanProsite, MotifScan SWISS-MODEL Submit a homology modeling request to SWISS-MODEL
NPSA logo NPSA Sequence analysis tools

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