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UniProtKB/Swiss-Prot entry O80448


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name PDX11_ARATH
Primary accession number O80448
Secondary accession numbers None
Integrated into Swiss-Prot on March 15, 2004
Sequence was last modified on November 1, 1998 (Sequence version 1)
Annotations were last modified on    July 22, 2008 (Entry version 58)
Name and origin of the protein
Protein name Pyridoxal biosynthesis protein PDX1.1
Synonyms HEVER-like protein
AtPDX1.1
AtPDX1;2
Gene name
Name: PDX11
Synonyms: PDX1L1
OrderedLocusNames: At2g38230
ORFNames: F16M14.16
From
Arabidopsis thaliana (Mouse-ear cress) [TaxID: 3702] 
Taxonomy Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids; eurosids II; Brassicales; Brassicaceae; Arabidopsis.
Protein existence 1: Evidence at protein level;
References
[1]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Columbia;
DOI=10.1038/45471; PubMed=10617197 [NCBI, ExPASy, EBI, Israel, Japan]
Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D., Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V., Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., Moffat K.S., Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J., Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M., Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O., Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C.;
"Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.";
Nature 402:761-768(1999).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=cv. Columbia;
DOI=10.1126/science.1088305; PubMed=14593172 [NCBI, ExPASy, EBI, Israel, Japan]
Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.;
"Empirical analysis of transcriptional activity in the Arabidopsis genome.";
Science 302:842-846(2003).
[3]
FUNCTION, AND SUBCELLULAR LOCATION.
DOI=10.1073/pnas.0506228102; PubMed=16157873 [NCBI, ExPASy, EBI, Israel, Japan]
Tambasco-Studart M., Titiz O., Raschle T., Forster G., Amrhein N., Fitzpatrick T.B.;
"Vitamin B6 biosynthesis in higher plants.";
Proc. Natl. Acad. Sci. U.S.A. 102:13687-13692(2005).
[4]
TISSUE SPECIFICITY, AND INTERACTION WITH PDX1.2, PDX1.3 AND PDX2.
STRAIN=cv. C24;
DOI=10.1105/tpc.105.036269; PubMed=16766694 [NCBI, ExPASy, EBI, Israel, Japan]
Wagner S., Bernhardt A., Leuendorf J.E., Drewke C., Lytovchenko A., Mujahed N., Gurgui C., Frommer W.B., Leistner E., Fernie A.R., Hellmann H.;
"Analysis of the Arabidopsis rsr4-1/pdx1-3 mutant reveals the critical function of the PDX1 protein family in metabolism, development, and vitamin B6 biosynthesis.";
Plant Cell 18:1722-1735(2006).
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
AC003028; AAC27172.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AF370296; AAK44111.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AF385694; AAK60287.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AY063043; AAL34217.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
PIR T01255; T01255.
RefSeq NP_181358.1; -.
UniGene At.68423
3D structure databases
ModBase O80448.
Protein-protein interaction databases
IntAct O80448; -.
Organism-specific databases
TAIR At2g38230; -.
Gene expression databases
GermOnline AT2G38230; Arabidopsis thaliana.
Ontologies
GO
GO:0005829; Cellular component: cytosol (inferred from direct assay from TAIR).
GO:0046982; Molecular function: protein heterodimerization activity (inferred from physical interaction from TAIR).
GO:0042819; Biological process: vitamin B6 biosynthetic process (inferred from genetic interaction from TAIR).
QuickGo view.
Family and domain databases
InterPro IPR001852; Snz1p/Sor1.
Graphical view of domain structure.
Pfam PF01680; SOR_SNZ; 1.
Pfam graphical view of domain structure.
PIRSF PIRSF029271; Pdx1; 1.
ProDom PD004958; Snz1p/Sor1; 1.
[Domain structure / List of seq. sharing at least 1 domain]
TIGRFAMs TIGR00343; Snz1p/Sor1; 1.
PROSITE PS01235; PDXS_SNZ_1; 1.
PS51129; PDXS_SNZ_2; 1.
PROSITE graphical view of domain structure (profiles).
BLOCKS O80448.
Proteomic databases
ProMEX O80448; -.
Genome annotation databases
GeneID 818402; -.
GenomeReviews CT485783_GR; AT2G38230.
KEGG ath:AT2G38230; -.
NMPDR fig|3702.1.peg.10935; -.
Other
ProtoNet O80448.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
Complete proteome; Cytoplasm; Pyridoxine biosynthesis.
Features
SEVIEWER logo Feature table viewer
KeyFrom To Length Description FTId
CHAIN   1   309  309     Pyridoxal biosynthesis protein PDX1.1. PRO_0000109366
Sequence information
Length: 309 AA [This is the length of the unprocessed precursor] Molecular weight: 32862 Da [This is the MW of the unprocessed precursor] CRC64: 10D9EEDAEDC0BC4C [This is a checksum on the sequence]
        10         20         30         40         50         60 
MAGTGVVAVY GEGAMTETKQ KSPFSVKVGL AQMLRGGVIM DVVNAEQARI AEEAGACAVM 

        70         80         90        100        110        120 
ALERVPADIR AQGGVARMSD PEMIKEIKNA VTIPVMAKAR IGHFVEAQIL EAIGVDYVDE 

       130        140        150        160        170        180 
SEVLTLADED NHINKHNFKI PFVCGCRNLG EALRRIREGA AMIRTKGEAG TGNVVEAVRH 

       190        200        210        220        230        240 
VRSVNGAIRL LRSMDDDEVF TYAKKIAAPY DLVVQTKELG RLPVVQFAAG GVATPADAAL 

       250        260        270        280        290        300 
MMQLGCDGVF VGSGVFKSGD PVKRAKAIVQ AVTNYRDAAV LAEVSCGLGE AMVGLNLDDK 


VERFASRSE 

O80448 in FASTA format

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