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UniProtKB/Swiss-Prot Documentation

Most of the documents listed in this page can also be downloaded by ftp (versions without hypertext links).

[General documents] [Nomenclature documents] [Species-specific documents] [Other documents]

General documents
User manual for the UniProt Knowledgebase (UniProtKB/Swiss-Prot+UniProtKB/TrEMBL) Release notes for the current major release / Statistics for the current biweekly release: UniProtKB/Swiss-Prot + UniProtKB/TrEMBL Recent format changes: flat file format / XML format Forthcoming format changes: flat file format / XML format A primer on UniProtKB/Swiss-Prot annotation List of on-line experts for UniProtKB/Swiss-Prot and PROSITE Controlled vocabulary of journals Controlled vocabulary of keywords Controlled vocabulary of species Controlled vocabulary of tissues Controlled vocabulary of strains Controlled vocabulary of plasmids Controlled vocabulary of post-translational modifications Controlled vocabulary of subcellular locations and membrane topologies and orientations Databases cross-referenced in UniProtKB/Swiss-Prot PATHWAY comments: index [Browse] SIMILARITY comments: index [Browse] Protein Spotlight articles and cited UniProtKB/Swiss-Prot entries Criteria used to assign a PE level to UniProtKB entries

General documents

User manual for the UniProt Knowledgebase (UniProtKB/Swiss-Prot+UniProtKB/TrEMBL)
Release notes for the current major release / Statistics for the current biweekly release: UniProtKB/Swiss-Prot + UniProtKB/TrEMBL
Recent format changes: flat file format / XML format
Forthcoming format changes: flat file format / XML format
A primer on UniProtKB/Swiss-Prot annotation

Nomenclature documents
Protein naming guidelines Protein nomenclature publication list Nomenclature of extracellular domains Blood group antigen proteins: list of entries Human cell differentiation molecules: CD nomenclature and list of entries Vertebrate homeotic Hox proteins: nomenclature and index Glycosyl hydrolase families: classification and list of entries Metallothioneins: classification and list of entries Peptidase families: classification and list of entries Human and mouse protein kinases: classification and index Allergens: nomenclature and list of entries Scorpion potassium channel toxins: nomenclature and list of entries Definitions of the terminology for ambiguities

Nomenclature documents

Species-specific documents
Eukaryotes (except fungi)
MIM cross-references in UniProtKB/Swiss-Prot Human entries with polymorphisms or mutations: list Human polymorphisms and disease mutations: index Human chromosome 1: entries, gene names and cross-references to MIM Human chromosome 2: entries, gene names and cross-references to MIM Human chromosome 3: entries, gene names and cross-references to MIM Human chromosome 4: entries, gene names and cross-references to MIM Human chromosome 5: entries, gene names and cross-references to MIM Human chromosome 6: entries, gene names and cross-references to MIM Human chromosome 7: entries, gene names and cross-references to MIM Human chromosome 8: entries, gene names and cross-references to MIM Human chromosome 9: entries, gene names and cross-references to MIM Human chromosome 10: entries, gene names and cross-references to MIM Human chromosome 11: entries, gene names and cross-references to MIM Human chromosome 12: entries, gene names and cross-references to MIM Human chromosome 13: entries, gene names and cross-references to MIM Human chromosome 14: entries, gene names and cross-references to MIM Human chromosome 15: entries, gene names and cross-references to MIM Human chromosome 16: entries, gene names and cross-references to MIM Human chromosome 17: entries, gene names and cross-references to MIM Human chromosome 18: entries, gene names and cross-references to MIM Human chromosome 19: entries, gene names and cross-references to MIM Human chromosome 20: entries, gene names and cross-references to MIM Human chromosome 21: entries, gene names and cross-references to MIM Human chromosome 22: entries, gene names and cross-references to MIM Human chromosome X: entries, gene names and cross-references to MIM Human chromosome Y: entries, gene names and cross-references to MIM MGD cross-references in UniProtKB/Swiss-Prot Arabidopsis thaliana: entries and gene names Oryza sativa (rice): entries and gene names Caenorhabditis elegans: entries, gene names and cross-references to WormPep [alternative view] Dictyostelium discoideum: entries, gene names and cross-references to DictyBase Drosophila: entries, gene names and cross-references to FlyBase
Prokaryotes
Escherichia coli strain K12: entries and cross-references to EcoGene Index of Escherichia coli Gene-protein database (ECO2DBASE) entries referenced in Swiss-Prot Bacillus subtilis strain 168: entries, gene names and cross-references to SubtiList Brucella abortus strain 2308: entries and gene names Brucella abortus: entries and gene names Brucella melitensis: entries and gene names Brucella suis: entries and gene names Buchnera aphidicola (subsp. Schizaphis graminum): entries and gene names Buchnera aphidicola (subsp. Acyrthosiphon pisum): entries and gene names Coxiella burnetii: entries and gene names Haemophilus influenzae strain Rd: entries and gene names Helicobacter pylori strain 26695: entries and gene names Methanococcus jannaschii: entries and gene names Mycoplasma genitalium strain G-37: entries and gene names Mycoplasma pneumoniae strain M129: entries and gene names Rhizobium plasmid pNGR234a: entries and gene names Rickettsia bellii strain RML369-C: entries and gene names Rickettsia conorii: entries and gene names Rickettsia felis (Rickettsia azadi): entries and gene names Rickettsia prowazekii strain Madrid E: entries and gene names Rickettsia typhi: entries and gene names Synechocystis strain PCC 6803: entries and gene names
Fungi
Yeast (Saccharomyces cerevisiae): entries, gene names and cross-references to SGD Yeast (Saccharomyces cerevisiae) chromosome 1 (I): entries and gene names Yeast (Saccharomyces cerevisiae) chromosome 2 (II): entries and gene names Yeast (Saccharomyces cerevisiae) chromosome 3 (III): entries and gene names Yeast (Saccharomyces cerevisiae) chromosome 5 (V): entries and gene names Yeast (Saccharomyces cerevisiae) chromosome 6 (VI): entries and gene names Yeast (Saccharomyces cerevisiae) chromosome 7 (VII): entries and gene names Yeast (Saccharomyces cerevisiae) chromosome 8 (VIII): entries and gene names Yeast (Saccharomyces cerevisiae) chromosome 9 (IX): entries and gene names Yeast (Saccharomyces cerevisiae) chromosome 10 (X): entries and gene names Yeast (Saccharomyces cerevisiae) chromosome 11 (XI): entries and gene names Yeast (Saccharomyces cerevisiae) chromosome 13 (XIII): entries and gene names Yeast (Saccharomyces cerevisiae) chromosome 14 (XIV): entries and gene names Candida albicans: entries and gene names Schizosaccharomyces pombe: entries and gene names

Other documents
7-transmembrane G-linked receptors: list of entries Aminoacyl-tRNA synthetases: list of entries Restriction enzymes and methylases: classification and list of entries Translation initiation factors: list of entries Ribosomal proteins families and list of entries Nomenclature of plastid-encoded proteins Intein-containing proteins: list of entries PDB cross-references in UniProtKB/Swiss-Prot Uncharacterized protein families (UPF): list of entries Accession numbers deleted from UniProtKB/Swiss-Prot Accession numbers deleted from UniProtKB/TrEMBL Secondary accession numbers: index UniProtKB/Swiss-Prot old release notes

Last modified 20/Mar/2009 by ELG

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