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Human proteomics initiative (HPI) links page

This list contains links to some human molecular specific resources. These links as well as many more are also available from the ExPASy Life Science Directory.

[General resources] [Chromosome specific resources] [Mutation databases resources] [Protein family specific resource]

General resources
OMIM - Online Mendelian Inheritance in Man GENATLAS - Human genes atlas GeneTests - Medical genetics knowledge base GeneCards - Db integrating information on human genes GeneLoc - Integrated map of the human genome (ex- UDB) Ensembl Human genome browser TIGR HGI - TIGR Human Gene Index Hs UniGene - Human transcripts in GenBank (EST clusters) STACK - Sequence Tag Alignment and Consensus Knowledgebase (Db of consensus human ESTs) Allgenes.org - Human predicted gene index/catalog GenLink - Human genetics resource GeneLynx - Portal to the human genome HUGE - Human Unidentified Gene-Encoded large proteins cDNA (KIAA...) CGAP - Cancer Genome Anatomy Project MGC - Mammalian Gene Collection SCDb - Stem cell db Homophila - Human Disease to Drosophila gene db Human Protein Atlas - Displays the expression and localization of proteins in a large variety of normal human tissues and cancer cells Progenetix CGH database - Molecular Cytogenetics in Leukemia and Cancer

General resources

OMIM - Online Mendelian Inheritance in Man
GENATLAS - Human genes atlas
GeneTests - Medical genetics knowledge base
GeneCards - Db integrating information on human genes
GeneLoc - Integrated map of the human genome (ex- UDB)
Ensembl Human genome browser
TIGR HGI - TIGR Human Gene Index
Hs UniGene - Human transcripts in GenBank (EST clusters)
STACK - Sequence Tag Alignment and Consensus Knowledgebase (Db of consensus human ESTs)
Allgenes.org - Human predicted gene index/catalog
GenLink - Human genetics resource
GeneLynx - Portal to the human genome
HUGE - Human Unidentified Gene-Encoded large proteins cDNA (KIAA...)
CGAP - Cancer Genome Anatomy Project
MGC - Mammalian Gene Collection
SCDb - Stem cell db
Homophila - Human Disease to Drosophila gene db
Human Protein Atlas - Displays the expression and localization of proteins in a large variety of normal human tissues and cancer cells
Progenetix CGH database - Molecular Cytogenetics in Leukemia and Cancer

Chromosome specific resources
Chr1 at Rutgers - Human chromosome 1 at Rutgers Chr1 at Sanger - Sanger Center chromosome 1 project Chr1 UniProtKB/Swiss-Prot - entries, gene names and cross-references to MIM Chr2 UniProtKB/Swiss-Prot - entries, gene names and cross-references to MIM Chr3 UniProtKB/Swiss-Prot - entries, gene names and cross-references to MIM Chr4 UniProtKB/Swiss-Prot - entries, gene names and cross-references to MIM Chr5 UniProtKB/Swiss-Prot - entries, gene names and cross-references to MIM Chr6 at Sanger - Sanger Center chromosome 6 project Chr6 UniProtKB/Swiss-Prot - entries, gene names and cross-references to MIM Chr7 UniProtKB/Swiss-Prot - entries, gene names and cross-references to MIM Chr8 UniProtKB/Swiss-Prot - entries, gene names and cross-references to MIM Chr9 at Sanger - Sanger Center chromosome 1 project Chr9 UniProtKB/Swiss-Prot - entries, gene names and cross-references to MIM Chr10 at Sanger - Sanger Center chromosome 10 project Chr10 UniProtKB/Swiss-Prot - entries, gene names and cross-references to MIM Chr11 UniProtKB/Swiss-Prot - entries, gene names and cross-references to MIM Chr12 UniProtKB/Swiss-Prot - entries, gene names and cross-references to MIM Chr13 at Sanger - Sanger Center chromosome 13 project Chr13 UniProtKB/Swiss-Prot - entries, gene names and cross-references to MIM Chr14 UniProtKB/Swiss-Prot - entries, gene names and cross-references to MIM Chr15 UniProtKB/Swiss-Prot - entries, gene names and cross-references to MIM Chr16 TIGR - Human chromosome 16 db at TIGR Chr16 UniProtKB/Swiss-Prot - entries, gene names and cross-references to MIM Chr17 UniProtKB/Swiss-Prot - entries, gene names and cross-references to MIM Chr18 UniProtKB/Swiss-Prot - entries, gene names and cross-references to MIM Chr19 UniProtKB/Swiss-Prot - entries, gene names and cross-references to MIM Chr20 at Sanger - Sanger Center chromosome 20 project Chr20 UniProtKB/Swiss-Prot - entries, gene names and cross-references to MIM Chr21 UniProtKB/Swiss-Prot - entries, gene names and cross-references to MIM Chr22 at Sanger - Sanger Center chromosome 22 project Chr22 at HGC - Human genome center for chromosome 22 Chr22 UniProtKB/Swiss-Prot - entries, gene names and cross-references to MIM ChrX at Sanger - Sanger Center chromosome 1 project ChrX UniProtKB/Swiss-Prot - entries, gene names and cross-references to MIM ChrY UniProtKB/Swiss-Prot - entries, gene names and cross-references to MIM H-InvDB Database - Human gene db, with cDNA clones available from six high throughput cDNA sequencing projects Human Chromosome1 Launchpad Human Chromosome2 Launchpad Human Chromosome3 Launchpad Human Chromosome4 Launchpad Human Chromosome5 Launchpad Human Chromosome6 Launchpad Human Chromosome7 Launchpad Human Chromosome8 Launchpad Human Chromosome9 Launchpad Human Chromosome10 Launchpad Human Chromosome11 Launchpad Human Chromosome12 Launchpad Human Chromosome13 Launchpad Human Chromosome14 Launchpad Human Chromosome15 Launchpad Human Chromosome16 Launchpad Human Chromosome17 Launchpad Human Chromosome18 Launchpad Human Chromosome19 Launchpad Human Chromosome20 Launchpad Human Chromosome21 Launchpad Human Chromosome22 Launchpad Human ChromosomeX Launchpad Human ChromosomeY Launchpad

Chromosome specific resources

Chr1 at Rutgers - Human chromosome 1 at Rutgers
Chr1 at Sanger - Sanger Center chromosome 1 project
Chr1 UniProtKB/Swiss-Prot - entries, gene names and cross-references to MIM
Chr2 UniProtKB/Swiss-Prot - entries, gene names and cross-references to MIM
Chr3 UniProtKB/Swiss-Prot - entries, gene names and cross-references to MIM
Chr4 UniProtKB/Swiss-Prot - entries, gene names and cross-references to MIM
Chr5 UniProtKB/Swiss-Prot - entries, gene names and cross-references to MIM
Chr6 at Sanger - Sanger Center chromosome 6 project
Chr6 UniProtKB/Swiss-Prot - entries, gene names and cross-references to MIM
Chr7 UniProtKB/Swiss-Prot - entries, gene names and cross-references to MIM
Chr8 UniProtKB/Swiss-Prot - entries, gene names and cross-references to MIM
Chr9 at Sanger - Sanger Center chromosome 1 project
Chr9 UniProtKB/Swiss-Prot - entries, gene names and cross-references to MIM
Chr10 at Sanger - Sanger Center chromosome 10 project
Chr10 UniProtKB/Swiss-Prot - entries, gene names and cross-references to MIM
Chr11 UniProtKB/Swiss-Prot - entries, gene names and cross-references to MIM
Chr12 UniProtKB/Swiss-Prot - entries, gene names and cross-references to MIM
Chr13 at Sanger - Sanger Center chromosome 13 project
Chr13 UniProtKB/Swiss-Prot - entries, gene names and cross-references to MIM
Chr14 UniProtKB/Swiss-Prot - entries, gene names and cross-references to MIM
Chr15 UniProtKB/Swiss-Prot - entries, gene names and cross-references to MIM
Chr16 TIGR - Human chromosome 16 db at TIGR
Chr16 UniProtKB/Swiss-Prot - entries, gene names and cross-references to MIM
Chr17 UniProtKB/Swiss-Prot - entries, gene names and cross-references to MIM
Chr18 UniProtKB/Swiss-Prot - entries, gene names and cross-references to MIM
Chr19 UniProtKB/Swiss-Prot - entries, gene names and cross-references to MIM
Chr20 at Sanger - Sanger Center chromosome 20 project
Chr20 UniProtKB/Swiss-Prot - entries, gene names and cross-references to MIM
Chr21 UniProtKB/Swiss-Prot - entries, gene names and cross-references to MIM
Chr22 at Sanger - Sanger Center chromosome 22 project
Chr22 at HGC - Human genome center for chromosome 22
Chr22 UniProtKB/Swiss-Prot - entries, gene names and cross-references to MIM
ChrX at Sanger - Sanger Center chromosome 1 project
ChrX UniProtKB/Swiss-Prot - entries, gene names and cross-references to MIM
ChrY UniProtKB/Swiss-Prot - entries, gene names and cross-references to MIM
H-InvDB Database - Human gene db, with cDNA clones available from six high throughput cDNA sequencing projects
Human Chromosome1 Launchpad
Human Chromosome2 Launchpad
Human Chromosome3 Launchpad
Human Chromosome4 Launchpad
Human Chromosome5 Launchpad
Human Chromosome6 Launchpad
Human Chromosome7 Launchpad
Human Chromosome8 Launchpad
Human Chromosome9 Launchpad
Human Chromosome10 Launchpad
Human Chromosome11 Launchpad
Human Chromosome12 Launchpad
Human Chromosome13 Launchpad
Human Chromosome14 Launchpad
Human Chromosome15 Launchpad
Human Chromosome16 Launchpad
Human Chromosome17 Launchpad
Human Chromosome18 Launchpad
Human Chromosome19 Launchpad
Human Chromosome20 Launchpad
Human Chromosome21 Launchpad
Human Chromosome22 Launchpad
Human ChromosomeX Launchpad
Human ChromosomeY Launchpad

Mutation databases resources
HGMD - Human Gene Mutation db SVD - EBI Sequence variation db HGVbase HGVS - The Human Genome Variation Society GeneDis - Human genetic disease db The International HapMap Project dbSNP - Human single nucleotide polymorphism (SNP) db ALFRED - Allele Frequency Db SeattleSNPs - UW-FHCRC Variation Discovery Resource PicSNP - Catalog of non-synonymous SNP List of mutation databases from OMIM List of mutation databases from IMT (Finland) ADAbase - Human adenosine deaminase (ADA) mutation db ADB - Albinism db (Mutations in human genes causing albinism) Albumin Web site AR mutations - Human androgen receptor mutation db Antithrombin mutation db Asthma and Allergy gene db BIOMDB - Db of mutations causing tetrahydrobiopterin deficiencies BLMbase - Human BLM mutation db (Bloom syndrome) BTKbase - Human BTK mutation db (X-linked agammaglobulinemia) CC_dbMD The Congenital Cataract Mutation Database CD3Ebase - Human CD3E mutation db CD3Gbase - Human CD3G mutation db CD40Lbase - Human CD40 ligand mutation db CD40Lbase - Human CD40 ligand mutation db COL1/3 mutation - Human Type I and III collagen mutation db Connexin-deafness - Human connexins mutation db CFTR mutation - Human cystic fibrosis mutation db (CFTR) KMbloodDB - Blood disease genes db KMbrainDB - Brain disease genes db KMcancerDB - Cancer disease genes db KMearDB - Ear disease genes db KMeyeDB - Eye disease genes db KMheartDB - Heart disease genes db KMmuscleDB - Muscle disease genes db KMsyndromeDB MaiDB (autoimmune) G6PD - Human G6PD deficiency resource G6PDdb - Human G6PD mutation db GNAS1 - Human GNAS1 mutation db HAMSTeRS - The Haemophilia A Mutation db and Factor VII Resource site Haemophilia B mutation db- Factor IX HbVar - Hemoglobin variants db Hereditary hearing loss homepage LDLR mutation - Human LDLR mutation db (Familial hypercholesterolemia) LHR - Human luteinizing hormone (LH) receptor mutation db NCF1base - Human NCF1 mutation db NCF2base - Human NCF2 mutation db Neuromuscular diseases web site NCL - Neuronal Ceroid Lipofuscinoses mutation db OCRL1 - OCRL1 mutation db (Lowe Syndrome) OTCase - Human ornithine transcarbamylase (OTCase) website Cytochrome P450 alleles nomenclature IARC TP53 mutation db - International Agency for Research on Cancer Germline p53 mutation db - University of Prague db of germline p53 mutations PAHdb - Human phenylalanine hydroxylase (PAH) mutation db PAX2 mutation - Human PAX2 mutation db PAX6 mutation - Human PAX6 mutation db Prion - Wikipedia Prion and prion disease RAG1base - Human RAG1 mutation db RAG2base - Human RAG2 mutation db RB1base - Human retinoblastoma-associated protein (RB) mutation db RetNet - Retinal Information Network Retina International Scientific Newsletter - Information on Retinal genes, proteins and diseases Alsod.org - ALS/SOD1 genetic mutations db TSC2 - Cardiff-Rotterdam Tuberous Sclerosis (TS) db (Tuberin; TSC2) TGDB - Tumor gene db VMD2 mutation - Human VMD2 mutation db vWF mutation - Human von Willebrand factor (vWF) mutation db WRN - Human WRN mutation db (Warner disease) X-ALD mutation - Human ABCD1 mutation db

Mutation databases resources

HGMD - Human Gene Mutation db
SVD - EBI Sequence variation db
HGVbase
HGVS - The Human Genome Variation Society
GeneDis - Human genetic disease db
The International HapMap Project
dbSNP - Human single nucleotide polymorphism (SNP) db
ALFRED - Allele Frequency Db
SeattleSNPs - UW-FHCRC Variation Discovery Resource
PicSNP - Catalog of non-synonymous SNP
List of mutation databases from OMIM
List of mutation databases from IMT (Finland)
ADAbase - Human adenosine deaminase (ADA) mutation db
ADB - Albinism db (Mutations in human genes causing albinism)
Albumin Web site
AR mutations - Human androgen receptor mutation db
Antithrombin mutation db
Asthma and Allergy gene db
BIOMDB - Db of mutations causing tetrahydrobiopterin deficiencies
BLMbase - Human BLM mutation db (Bloom syndrome)
BTKbase - Human BTK mutation db (X-linked agammaglobulinemia)
CC_dbMD The Congenital Cataract Mutation Database
CD3Ebase - Human CD3E mutation db
CD3Gbase - Human CD3G mutation db
CD40Lbase - Human CD40 ligand mutation db
CD40Lbase - Human CD40 ligand mutation db
COL1/3 mutation - Human Type I and III collagen mutation db
Connexin-deafness - Human connexins mutation db
CFTR mutation - Human cystic fibrosis mutation db (CFTR)
KMbloodDB - Blood disease genes db
KMbrainDB - Brain disease genes db
KMcancerDB - Cancer disease genes db
KMearDB - Ear disease genes db
KMeyeDB - Eye disease genes db
KMheartDB - Heart disease genes db
KMmuscleDB - Muscle disease genes db
KMsyndromeDB
MaiDB (autoimmune)
G6PD - Human G6PD deficiency resource
G6PDdb - Human G6PD mutation db
GNAS1 - Human GNAS1 mutation db
HAMSTeRS - The Haemophilia A Mutation db and Factor VII Resource site
Haemophilia B mutation db- Factor IX
HbVar - Hemoglobin variants db
Hereditary hearing loss homepage
LDLR mutation - Human LDLR mutation db (Familial hypercholesterolemia)
LHR - Human luteinizing hormone (LH) receptor mutation db
NCF1base - Human NCF1 mutation db
NCF2base - Human NCF2 mutation db
Neuromuscular diseases web site
NCL - Neuronal Ceroid Lipofuscinoses mutation db
OCRL1 - OCRL1 mutation db (Lowe Syndrome)
OTCase - Human ornithine transcarbamylase (OTCase) website
Cytochrome P450 alleles nomenclature
IARC TP53 mutation db - International Agency for Research on Cancer
Germline p53 mutation db - University of Prague db of germline p53 mutations
PAHdb - Human phenylalanine hydroxylase (PAH) mutation db
PAX2 mutation - Human PAX2 mutation db
PAX6 mutation - Human PAX6 mutation db
Prion - Wikipedia Prion and prion disease
RAG1base - Human RAG1 mutation db
RAG2base - Human RAG2 mutation db
RB1base - Human retinoblastoma-associated protein (RB) mutation db
RetNet - Retinal Information Network
Retina International Scientific Newsletter - Information on Retinal genes, proteins and diseases
Alsod.org - ALS/SOD1 genetic mutations db
TSC2 - Cardiff-Rotterdam Tuberous Sclerosis (TS) db (Tuberin; TSC2)
TGDB - Tumor gene db
VMD2 mutation - Human VMD2 mutation db
vWF mutation - Human von Willebrand factor (vWF) mutation db
WRN - Human WRN mutation db (Warner disease)
X-ALD mutation - Human ABCD1 mutation db

Protein family specific resources
PROSITE - PROSITE dictionary of protein sites and patterns InterPro - Integrated Resources of Proteins Domains and Functional Sites Gene(s)/protein(s) specific databases/resources

Last modified 04-Jul-2009

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