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HAMAP: Borrelia garinii complete proteome

General information

Species:  Borrelia garinii
Species code: BORGA
Taxonomy: Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Borrelia; Borrelia burgdorferi group (TaxID: 29519) [NEWT/ NCBI]
Description: Borrelia garinii has been found to be involved in cases of Lyme borreliosis. It is associated with neurological symptoms.
Properties: Presence of flagella: Yes
Interaction: Animal pathogen in Mammalia
Number of membranes: 2
Number of inteins:0
Statistics: Number of BORGA entries in the UniProt Knowledgebase: 1262 (200 in UniProtKB/Swiss-Prot + 1062 in UniProtKB/TrEMBL)


Genome(s) sequenced

Strain:    PBi
Genome structure:
• Chromosome EMBL accession number CP000013 (linear; 904,246 bp) (download entry) (download Genome Reviews).
• Plasmid cp26 EMBL accession number CP000014 (circular; 27,108 bp) (download entry) (download Genome Reviews).
• Plasmid lp54 EMBL accession number CP000015 (linear; 55,560 bp) (download entry) (download Genome Reviews).
• Plasmid 3 EMBL accession number AY722917 (linear; 24,477 bp) (download entry) (download Genome Reviews).
• Plasmid 4 EMBL accession number AY722918 (linear; 17,646 bp) (download entry) (download Genome Reviews).
• Plasmid 5 EMBL accession number AY722919 (linear; 16,203 bp) (download entry) (download Genome Reviews).
• Plasmid 6 EMBL accession number AY722920 (linear; 16,067 bp) (download entry) (download Genome Reviews).
• Plasmid 7 EMBL accession number AY722921 (linear; 14,531 bp) (download entry) (download Genome Reviews).
• Plasmid 8 EMBL accession number AY722922 (linear; 13,081 bp) (download entry) (download Genome Reviews).
• Plasmid 9 EMBL accession number AY722923 (linear; 11,694 bp) (download entry) (download Genome Reviews).
• Plasmid 10 EMBL accession number AY722924 (linear; 11,868 bp) (download entry) (download Genome Reviews).
• Plasmid 11 EMBL accession number AY722925 (linear; 9,174 bp) (download entry) (download Genome Reviews).
• Plasmid 12 EMBL accession number AY722926 (linear; 7,654 bp) (download entry) (download Genome Reviews).
• Plasmid 13 EMBL accession number AY722927 (linear; 6,835 bp) (download entry) (download Genome Reviews).
• Plasmid 14 EMBL accession number AY722928 (linear; 5,982 bp) (download entry) (download Genome Reviews).
• Plasmid 15 EMBL accession number AY722929 (linear; 5,841 bp) (download entry) (download Genome Reviews).
• Plasmid 16 EMBL accession number AY722930 (linear; 5,824 bp) (download entry) (download Genome Reviews).
• Plasmid 17 EMBL accession number AY722931 (linear; 5,617 bp) (download entry) (download Genome Reviews).
• Plasmid 18 EMBL accession number AY722932 (linear; 5,490 bp) (download entry) (download Genome Reviews).
• Plasmid 19 EMBL accession number AY722933 (linear; 4,649 bp) (download entry) (download Genome Reviews).
• Plasmid 20 EMBL accession number AY722934 (linear; 4,109 bp) (download entry) (download Genome Reviews).
• Plasmid 21 EMBL accession number AY722935 (linear; 4,050 bp) (download entry) (download Genome Reviews).
• Plasmid 22 EMBL accession number AY722936 (linear; 3,972 bp) (download entry) (download Genome Reviews).
• Plasmid 23 EMBL accession number AY722937 (linear; 3,881 bp) (download entry) (download Genome Reviews).
• Plasmid 24 EMBL accession number AY722938 (linear; 3,433 bp) (download entry) (download Genome Reviews).
• Plasmid 25 EMBL accession number AY722939 (linear; 3,380 bp) (download entry) (download Genome Reviews).
• Plasmid 26 EMBL accession number AY722940 (linear; 3,306 bp) (download entry) (download Genome Reviews).
• Plasmid 27 EMBL accession number AY722941 (linear; 3,140 bp) (download entry) (download Genome Reviews).
• Plasmid 28 EMBL accession number AY722942 (linear; 3,140 bp) (download entry) (download Genome Reviews).
• Plasmid 29 EMBL accession number AY722943 (linear; 2,600 bp) (download entry) (download Genome Reviews).
• Plasmid 30 EMBL accession number AY722944 (linear; 2,543 bp) (download entry) (download Genome Reviews).
• Plasmid 31 EMBL accession number AY722945 (linear; 2,526 bp) (download entry) (download Genome Reviews).
• Plasmid 32 EMBL accession number AY722946 (linear; 2,438 bp) (download entry) (download Genome Reviews).
• Plasmid 33 EMBL accession number AY722947 (linear; 2,308 bp) (download entry) (download Genome Reviews).
• Plasmid 34 EMBL accession number AY722948 (linear; 2,075 bp) (download entry) (download Genome Reviews).
• Plasmid 35 EMBL accession number AY722949 (linear; 2,074 bp) (download entry) (download Genome Reviews).
• Plasmid 36 EMBL accession number AY722950 (linear; 2,071 bp) (download entry) (download Genome Reviews).
• Plasmid 37 EMBL accession number AY722951 (linear; 2,270 bp) (download entry) (download Genome Reviews).
• Plasmid 38 EMBL accession number AY722952 (linear; 2,062 bp) (download entry) (download Genome Reviews).
• Plasmid 39 EMBL accession number AY722953 (linear; 2,008 bp) (download entry) (download Genome Reviews).
Reference(s):
[1] PubMed=15547252; [ NCBI , EBI , Israel , Japan ]
Gloeckner G., Lehmann R., Romualdi A., Pradella S., Schulte-Spechtel U., Schilhabel M., Wilske B., Suehnel J., Platzer M. ;
"Comparative analysis of the Borrelia garinii genome.";
Nucleic Acids Res. 32:6038-6046(2004).
Web links:
CBS: http://www.cbs.dtu.dk/services/GenomeAtlas/show-genus.php?kingdom=Bacteria&GLgenus=Borrelia&GLspecies=garinii&GLstrain=PBi
Entrez Genome Project: http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=txid290434%5Borgn%5D
GIB (DDBJ): http://gib.genes.nig.ac.jp/single/index.php?spid=Bgar_PBI
Karyn's Genomes: http://www.ebi.ac.uk/2can/genomes/bacteria/Borrelia_garinii.html
PEDANT: http://pedant.gsf.de:3345/pedant3htmlview/pedant3view?Method=start_method&Db=p3_p12554_Bor_garin
TIGR CMR: http://cmr.tigr.org/tigr-scripts/CMR/GenomePage.cgi?database=ntbg01
 EBI Proteome Analysis page



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