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Entry: PS00365

General information about the entry
Entry nameNIR_SIR
Accession numberPS00365
Entry typePATTERN
DateNOV-1990 (CREATED); APR-2006 (DATA UPDATE); MAY-2009 (INFO UPDATE).
PROSITE DocumentationPDOC00314
Name and characterization of the entry
DescriptionNitrite and sulfite reductases iron-sulfur/siroheme-binding site.
Pattern[STVN]-G-C-x(3)-C-x(6)-[DE]-[LIVMF]-[GAT]-[LIVMF].
Numerical results
  • UniProtKB/Swiss-Prot release number: 57.4, total number of sequence entries in that release: 470369.
  • Total number of hits in UniProtKB/Swiss-Prot: 123 hits in 123 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 122 hits in 122 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 1 hits in 1 different sequences
  • Number of known missed hits: 4
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 1
  • Precision (true hits / (true hits + false positives)): 99.19 %
  • Recall (true hits / (true hits + false negatives)): 96.83 %
Comments
  • Taxonomic range: Archaebacteria, Eukaryotes, Prokaryotes (Bacteria)
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • `Interesting' site in the pattern: 3,iron_sulfur
  • `Interesting' site in the pattern: 5,iron_sulfur/siroheme
  • VERSION: 2
Cross-references
UniProtKB/Swiss-ProtTrue positive hits:
ASRC_SALTI  (P0A1Y3), ASRC_SALTY  (P0A1Y2), COBG_PSEDE  (P21637), 
CYSI_ACTP2  (A3N3D8), CYSI_ACTP7  (B3GZ95), CYSI_ACTPJ  (B0BT17), 
CYSI_ACTPL  (Q8VSR0), CYSI_ACTSZ  (A6VPZ1), CYSI_AERHH  (A0KNL0), 
CYSI_ALISL  (B6ELM5), CYSI_ALTMD  (B4RYS6), CYSI_BAUCH  (Q1LTP2), 
CYSI_BLOFL  (Q7VQH1), CYSI_BLOPB  (Q493N3), CYSI_BUCAI  (P57502), 
CYSI_BUCAP  (P0C0B2), CYSI_CITK8  (A8ANX0), CYSI_COLP3  (Q47UW8), 
CYSI_ECO24  (A7ZQK6), CYSI_ECO45  (B7MKN0), CYSI_ECO57  (Q8X7U2), 
CYSI_ECO5E  (B5Z3C6), CYSI_ECO7I  (B7NTA0), CYSI_ECO8A  (B7LXH6), 
CYSI_ECOHS  (A8A3P4), CYSI_ECOK1  (A1AEU9), CYSI_ECOL5  (Q0TEA3), 
CYSI_ECOL6  (Q8FEI8), CYSI_ECOLC  (B1IU78), CYSI_ECOLI  (P17846), 
CYSI_ECOLU  (B7N6Z7), CYSI_ECOSE  (B6I6F7), CYSI_ECOSM  (B1LQ86), 
CYSI_ECOUT  (Q1R7T5), CYSI_ENT38  (A4WDW0), CYSI_ENTS8  (A7MJ64), 
CYSI_ERWCT  (Q6D1A2), CYSI_ESCF3  (B7LWN9), CYSI_KLEP3  (B5XV25), 
CYSI_KLEP7  (A6TD48), CYSI_MANSM  (Q65T54), CYSI_NEIM0  (A9LZ72), 
CYSI_NEIMA  (Q9JUD9), CYSI_NEIMB  (Q9JS33), CYSI_NEIMF  (A1KU05), 
CYSI_PHOLL  (Q7N8L5), CYSI_PHOPR  (Q6LM59), CYSI_PROMH  (B4F234), 
CYSI_PSEA6  (Q15NK1), CYSI_SALA4  (B5F430), CYSI_SALAR  (A9MF17), 
CYSI_SALCH  (Q57KH8), CYSI_SALDC  (B5FTU2), CYSI_SALEP  (B5QW35), 
CYSI_SALG2  (B5RDS0), CYSI_SALHS  (B4TFY4), CYSI_SALNS  (B4T474), 
CYSI_SALPA  (Q5PEH8), CYSI_SALPB  (A9N2E5), CYSI_SALPK  (B5BEZ8), 
CYSI_SALSV  (B4TTX8), CYSI_SALTI  (Q8Z459), CYSI_SALTY  (P17845), 
CYSI_SERP5  (A8G9X7), CYSI_SHEB5  (A3D829), CYSI_SHEB8  (A6WJT5), 
CYSI_SHEB9  (A9L2P8), CYSI_SHEDO  (Q12QQ5), CYSI_SHEON  (Q8EB00), 
CYSI_SHEPC  (A4Y9Z3), CYSI_SHESA  (A0KTH5), CYSI_SHESM  (Q0HFL7), 
CYSI_SHESR  (Q0HYB3), CYSI_SHESW  (A1RGD7), CYSI_SHIB3  (B2TZH1), 
CYSI_SHIBS  (Q31XM5), CYSI_SHIDS  (Q32CG4), CYSI_SHIF8  (Q0T1I7), 
CYSI_SHIFL  (Q83QE0), CYSI_SHISS  (Q3YY95), CYSI_SODGM  (Q2NVN3), 
CYSI_THIRO  (P52673), CYSI_VIBC3  (A5F3I5), CYSI_VIBCH  (Q9KUX3), 
CYSI_VIBF1  (Q5E840), CYSI_VIBFM  (B5FGI9), CYSI_VIBHB  (A7MSZ7), 
CYSI_VIBPA  (Q87L91), CYSI_VIBVU  (Q8DCK1), CYSI_VIBVY  (Q7MHA6), 
CYSI_YERE8  (A1JJS3), CYSI_YERP3  (A7FLY9), CYSI_YERPA  (Q1C3Z1), 
CYSI_YERPB  (B2K566), CYSI_YERPE  (Q8ZBN7), CYSI_YERPN  (Q1CLS7), 
CYSI_YERPP  (A4TPY6), CYSI_YERPS  (Q66ED3), CYSI_YERPY  (B1JK04), 
CYSI_ZYMMO  (Q5NRM2), ECM17_YEAST (P47169), NIRB_ECOLI  (P08201), 
NIRB_KLEOX  (Q06458), NIR_ARATH   (Q39161), NIR_BETVE   (P38500), 
NIR_EMENI   (P22944), NIR_MAIZE   (P17847), NIR_NEUCR   (P38681), 
NIR_ORYSJ   (Q42997), NIR_PHOLA   (Q51879), NIR_PINSY   (Q43090), 
NIR_SPIOL   (P05314), NIR_SYNE7   (P39661), SIR1_MYCPA  (Q73YC1), 
SIR2_MYCPA  (Q73XV0), SIR_DESVH   (Q05805), SIR_MYCBO   (Q7TYP6), 
SIR_MYCTU   (P71753), SIR_SYNE7   (P30008), SIR_SYNY3   (P72854), 
Y551_METJA  (Q57971), Y870_METJA  (Q58280)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
CYSI_PSEHT  (Q3IFM1), CYSI_SHEAM  (A1S9I4), ECM17_SCHPO (Q1K9C2), 
NASD_BACSU  (P42435)
`Potential' hits (partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences):
NIR_LEPMC   (P43504)
False positive hits (sequences which do not belong to the set under consideration):
ARGJ_DESPS  (Q6AJL0)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]
1AOP; 1ZJ8; 1ZJ9; 2AKJ; 2AOP; 2GEP; 3AOP; 3GEO; 4AOP; 4GEP; 5AOP; 5GEP; 6GEP; 7GEP; 8GEP;

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